Data literacy in the smart university approach

Equipping classrooms with inexpensive sensors for data collection can provide students and teachers with the opportunity to interact with the classroom in a smart way. In this paper two approaches to acquiring contextual data from a classroom environment are presented. We further present our approach to analysing the collected room usage data on site, using low cost single board computer, such as a Raspberry Pi and Arduino units, performing a significant part of the data analysis on-site. We demonstrate how the usage data was used to model specifcic room usage situation as cases in a Case-based reasoning (CBR) system. The room usage data was then integrated in a room recommender system, reasoning on the formalised usage data, allowing for a convenient and intuitive end user experience based on the collected raw sensor data. Having implemented and tested our approaches we are currently investigating the possibility of using (XML)Schema-informed compression to enhance the security and efficiency of the transmission of a large number of sensor reports generated by interpreting the raw data on-site, to our central data sink. We are investigating this new approach to usage data transmission as we are aiming to integrate our on-going work into our vision of the Smart University to ensure and enhance the Smart University's data literacy

Two-phased knowledge formalisation for hydrometallurgical gold ore process recommendation and validation

This paper describes an approach to externalising and formalising expert knowledge involved in the design and evaluation of hydrometallurgical process chains for gold ore treatment. The objective was to create a case-based reasoning application for recommending and validating a treatment process of gold ores. We describe a twofold approach. Formalising human expert knowledge about gold mining situations enables the retrieval of similar mining contexts and respective process chains, based on prospection data gathered from a potential gold mining site. Secondly, empirical knowledge on hydrometallurgical treatments is formalised. This enabled us to evaluate and, where needed, redesign the process chain that was recommended by the first aspect of our approach. The main problems with formalisation of knowledge in the domain of gold ore refinement are the diversity and the amount of parameters used in literature and by experts to describe a mining context. We demonstrate how similarity knowledge was used to formalise literature knowledge. The evaluation of data gathered from experiments with an initial prototype workflow recommender, Auric Adviser, provides promising results

Statistical methods for biological sequence analysis for DNA binding motifs and protein contacts

Over the last decades a revolution in novel measurement techniques has permeated the biological sciences filling the databases with unprecedented amounts of data ranging from genomics, transcriptomics, proteomics and metabolomics to structural and ecological data. In order to extract insights from the vast quantity of data, computational and statistical methods are nowadays crucial tools in the toolbox of every biological researcher. In this thesis I summarize my contributions in two data-rich fields in biological sciences: transcription factor binding to DNA and protein structure prediction from protein sequences with shared evolutionary ancestry. In the first part of my thesis I introduce our work towards a web server for analysing transcription factor binding data with Bayesian Markov Models. In contrast to classical PWM or di-nucleotide models, Bayesian Markov models can capture complex inter-nucleotide dependencies that can arise from shape-readout and alternative binding modes. In addition to giving access to our methods in an easy-to-use, intuitive web-interface, we provide our users with novel tools and visualizations to better evaluate the biological relevance of the inferred binding motifs. We hope that our tools will prove useful for investigating weak and complex transcription factor binding motifs which cannot be predicted accurately with existing tools. The second part discusses a statistical attempt to correct out the phylogenetic bias arising in co-evolution methods applied to the contact prediction problem. Co-evolution methods have revolutionized the protein-structure prediction field more than 10 years ago, and, until very recently, have retained their importance as crucial input features to deep neural networks. As the co-evolution information is extracted from evolutionarily related sequences, we investigated whether the phylogenetic bias to the signal can be corrected out in a principled way using a variation of the Felsenstein's tree-pruning algorithm applied in combination with an independent-pair assumption to derive pairwise amino counts that are corrected for the evolutionary history. Unfortunately, the contact prediction derived from our corrected pairwise amino acid counts did not yield a competitive performance.2021-09-2

Approaches to the use of sensor data to improve classroom experience

quipping classrooms with inexpensive sensors can enable students and teachers with the opportunity to interact with the classroom in a smart way. In this paper an approach to acquiring contextual data from a classroom environment, using inexpensive sensors, is presented. We present our approach to formalising the usage data. Further we demonstrate how the data was used to model specific room usage situation as cases in a Case-based reasoning (CBR) system. The room usage data was than integrated in a room recommendations system, reasoning on the formalised usage data. We also detail on our on-going work to integrating the systems presented in this paper into our Smart University vision

Knowledge modelling with the open source tool myCBR

Building knowledge intensive Case-Based Reasoning applications requires tools that support this on-going process between domain experts and knowledge engineers. In this paper we will introduce how the open source tool myCBR 3 allows for flexible knowledge elicitation and formalisation form CBR and non CBR experts. We detail on myCBR 3 's versatile approach to similarity modelling and will give an overview of the Knowledge Engineering workbench, providing the tools for the modelling process. We underline our presentation with three case studies of knowledge modelling for technical diagnosis and recommendation systems using myCBR 3

Wind-induced drift of objects at sea: the leeway field method

A method for conducting leeway field experiments to establish the drift properties of small objects (0.1-25 m) is described. The objective is to define a standardized and unambiguous procedure for condensing the drift properties down to a set of coefficients that may be incorporated into existing stochastic trajectory forecast models for drifting objects of concern to search and rescue operations and other activities involving vessels lost at sea such as containers with hazardous material. An operational definition of the slip or wind and wave-induced motion of a drifting object relative to the ambient current is proposed. This definition taken together with a strict adherence to 10 m wind speed allows us to refer unambiguously to the leeway of a drifting object. We recommend that all objects if possible be studied using what we term the direct method, where the object's leeway is studied directly using an attached current meter. We divide drifting objects into four categories, depending on their size. For the smaller objects (less than 0.5 m), an indirect method of measuring the object's motion relative to the ambient current must be used. For larger objects, direct measurement of the motion through the near-surface water masses is strongly recommended. Larger objects are categorized according to the ability to attach current meters and wind monitoring systems to them. The leeway field method proposed here is illustrated with results from field work where three objects were studied in their distress configuration; a 1:3.3 sized model of a 40-ft Shipping container, a World War II mine and a 220 l (55-gallon) oil drum.Comment: 33 pages, 12 figures, 3 table

A Creative Exploration of the Use of Intelligent Agents in Spatial Narrative Structures

This thesis is an interdisciplinary study of authoring tools for creating spatial narrative structures– exposing the relationship between artists, the tools they use, and the experiences they create. It is a research-creation enterprise resulting in the creation of a new authoring tool. A prototype collaborative tool for authoring spatial narratives used at the Land|Slide: Possible Futures public art exhibit in Markham, Ontario 2013 is described. Using narrative analysis of biographical information a cultural context for authoring and experiencing spatial narrative structures is discussed. The biographical information of artists using digital technologies is posited as a context framing for usability design heuristics. The intersection of intelligent agents and spatial narrative structures provide a future scenario by which to assess the suitability of the approach outlined in this study